PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8698_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 385aa    MW: 44376.3 Da    PI: 5.8571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8698_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13231276454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h  +ErrRR+++N++f +Lr+l+P       +K++K++iL  +++Y+++L
  RrC8698_p2 231 NHVVAERRRREKLNERFITLRSLVPFV-----TKMDKVSILGDTIDYVNHL 276
                 6999**********************8.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.5E-17166IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.396227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18230293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.99E-13230276No hitNo description
Gene3DG3DSA:4.10.280.105.3E-19231295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-11231276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-17233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MPGKAYARRK QVWMSGVNEV DSKIFSRAIS AKTVVCIPVL DGVLEIGTTN KVKENEEFVE  60
HMKSFFQNHP KSNTKPALFE HSINEEHEED EEEVEEMTMS EEIRLGSPDD DDVSNQNLLS  120
DFHIEAPSSL DTQMDMMNLM EEGGNYSQTV STLLMSQLPN LLSDSVSTSS YVQSSFVSWR  180
VENVKEHQQY QREEKASSSS SSQWMLKHMI LRVPLLHENT KNKRVPREEL NHVVAERRRR  240
EKLNERFITL RSLVPFVTKM DKVSILGDTI DYVNHLCKRI HELESTHHEP NQKRMRIGKG  300
RTWEEVEVSI IESDVLLEMR CEYRDGLLLN ILQVLKELGI ETTAVHTAVN DHDFEAEIRA  360
KVRGKKPTIA EVKIAIHQII SQNKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240ERRRRE
2236241RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1920270.0EU192027.1 Brassica napus bHLH DNA-binding domain transcription factor (TT8.1) mRNA, complete cds.
GenBankHQ3377910.0HQ337791.1 Brassica rapa subsp. rapa cultivar Tsuda transparent testa 8 (TT8) mRNA, complete cds.
GenBankKM4034520.0KM403452.1 Brassica rapa cultivar Zi He bHLH transcription factor (TT8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302903.10.0transcription factor TT8-like
RefseqXP_013609428.10.0PREDICTED: transcription factor TT8
SwissprotQ9FT810.0TT8_ARATH; Transcription factor TT8
TrEMBLE5D8F80.0E5D8F8_BRAOB; TT8
STRINGBra037887.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-171bHLH family protein